The newest platform for NGS data analysis for microorganism identification.
Perform simpler, faster and more informative analysis for both infectious and non-infectious microorganisms through a simple and efficient platform with customized bioinformatics pipelines.
We are part of the best
Hospital in Latin America
We preserve the diversity and the organizational culture of the Albert Einstein Israelite Hospital, considered by America Economia Intelligence’s ranking as the best hospital in Latin America.
How Varmetagen® can help you
Get the ideal ally in the practice of the most accurate diagnostic medicine for infectious diseases and microbiome analysis.
Traditional method
 |
Generic diagnosis for viral infections |
|
Specific PCR for each pathogen |
Viroma + Varsmetagen®
 | 1 single wet-lab exam |
| Precise diagnosis |
Step by step
1.Routine configuration
Register an analysis routine specifying basic data, such as the desired bioinformatics pipeline, sequencing platform and kit used in the process.
1.Routine configuration
Register an analysis routine specifying basic data, such as the desired bioinformatics pipeline, sequencing platform and kit used in the process.
2.File upload
In the upload step, upload the NGS sequencing raw files of the clinical samples. Varmetagen accepts the main formats (FASTQ, FASTQ.GZ and BAM).
3.Data processing
It is possible to relate each sample (input files) to information such as collection date, sample type, unique ID, previously registered patient. Then, just start the processing and track its progress.
3.Data processing
It is possible to relate each sample (input files) to information such as collection date, sample type, unique ID, previously registered patient. Then, just start the processing and track its progress.
4.Analysis
After the processing is done, it’s possible to evaluate quality metrics and the diversity of microorganisms present in each sample individually. Thus, ensuring more security and practicality in the analysis (interpretation of results for generating reports).
Implement the precision and modernity of diagnostic medicine into your routine now!
Trusted by
Simple and practical interface
More efficient analysis
Clearer and more intuitive results
Anomalymeter
Anomaly score aiming to highlight the most relevant species in a sample through artificial intelligence algorithms. Varmetagen’ Anomalymeter tool is capable of identifying the most common organisms, such as bacteria that are part of the human microbiota, and Attribute them a lower score. On the other hand, atypical microorganisms such as pathogens or in abnormal abundance receive a high score. This way, the algorithm selects the most relevant microorganisms in the sample in an automated way.
Success case
The SarsOmics project, funded by CNPq, emerged at the beginning of the pandemic and carries out the sequencing of the COVID-19 virus, SARS-CoV-2, in addition to studying co-infections with other viruses, bacteria and fungi, through Next Generation sequencing.
Success case
The SarsOmics project, funded by CNPq, emerged at the beginning of the pandemic and carries out the sequencing of the COVID-19 virus, SARS-CoV-2, in addition to studying co-infections with other viruses, bacteria and fungi, through Next Generation sequencing.
Conduct analysis following the College of American Pathologists guidelines.
Varsmetagen allows you to implement the main CAP guidelines in your analysis.
FAQ
Even today, we often see patients with febrile syndrome who seek care without the etiological agent being precisely identified, as PCR tests are usually specific to identify only one pathogen, causing the doctor to have to order several tests. This can take up valuable time that could be used to treat the patient. In this sense, the virome test, combined with a unique and intuitive bioinformatics solution such as Varsmetagen, will help bring the paradigm of precision medicine to the diagnosis of infectious diseases. Whatever the virus, a single wet-lab scan can provide the data for diagnosis.
– Laboratory analysts who perform tests in the area of metagenomics and genomics of microorganisms and who do not have in-depth knowledge of bioinformatics;
– Bioinformatics or analysts who face problems with the definitions of pipelines for analyzing microorganism data;
– Microbiology and metagenomics researchers who want to obtain analysis results for projects and publication;
– Pathologists or infectologists who wish to inspect or validate results for report generation;
In addition to providing the entire computational infrastructure, we simplify the configuration of pipelines for analyzing microorganism data. This way, you won’t have to worry about parameter definitions and tool configuration during the processing steps.